Files included:

RunGenomeBasedModel.R
An R script to analyze simulated data using GenomeBasedModel. 

RunGenomeBasedModel.RData
Results of RunGenomeBasedModel.R. This includes unpublished results.

GIGANTEA.R
An R script describing the model for GIGANTEA.

GIGANTEA.cpp
An C++ script describing the model for GIGANTEA.

Temperature.csv
Temperature in Tsukuba city from June 4 to 8 in 2008

Samplingpoint.csv
Sampling points represented as the row numbers in Temperature.csv

Geno.csv
Marker genotypes used in simulation

Genotypicvalue.csv
Simulated genotypic values of parameters.

Parameters.csv
Simulated parameter values

QTL.a.csv, QTL.b.csv, QTL.ol.csv, and QTL.th.csv
QTL positions (row numbers in Geno.csv) and QTL effects for each parameter.

Y.csv
Simulated transcription levels

SimulatedOscillation.tiff
Visualization of Y.csv